Snaphic2
WebHere we present SnapHiC2, an efficient chromatin loop caller for scHi-C data. Compared to SnapHiC, SnapHiC2 achieves more than 3X speed up and saves 70% memory usage, making the identification ... WebPhD student, University of North Carolina at Chapel Hill - Cited by 1,107 - Machine Learning - bioinformatics - web development - CAZyme - anti-CRISPR
Snaphic2
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WebTweets and Medias erin_aboelnour Twitter ( Dr. Erin Aboelnour ) Munich, Bavaria WebBPG is committed to discovery and dissemination of knowledge About the Journal; Submit a Manuscript; Current Issue; JOURNAL HOME
Web1 Mar 2024 · 68 pairs. Our recent work SnapHiC and SnapHiC227,28 perform data imputation by RWR first and then combine 69 global and local background models to identify chromatin loops from single cells of the same cell type. While 70 being the first and only existing method to detect chromatin loops from scHi-C data, most SnapHiC-identified WebUse the gear icon on the search box to create complex queries
WebSnapHiC2: a computationally efficient loop caller for single cell Hi-C data. Computational and Structural Biotechnology Journal. 20:2778-2783. *Co-first author. #Co-corresponding author. 25. Huang L*, Yang Y*, Li G, Jiang M, Wen J, Abnousi A, Rosen J, Hu M# and Li Y# (2024). A systematic evaluation of Hi-C data enhancement methods for enhancing ... WebSee tweets, replies, photos and videos from @erin_aboelnour Twitter profile. 288 Followers, 669 Following. Mom and #firstgen scientist interested in enhancer biology and transcription in #4Dgenome and #corticogenesis; Go #mancity! @PioneerCampus @BonevLab
Web6 Oct 2024 · The three-dimensional (3D) structure of chromosomes influences essential biological processes such as gene expression, genome replication, and DNA damage repair and has been implicated in many developmental and degenerative diseases. In the past two centuries, two complementary genres of technology—microscopy, such as fluorescence in …
flatbed square body chevyWeb19 Jun 2024 · Department of Genetics faculty, postdocs, students and collaborators published 16 papers during June 5 th – 18 th, 2024. SnapHiC2: A computationally efficient loop caller for single cell Hi-C data. Comput Struct Biotechnol J. 2024 Jun 1;20:2778-2783. doi: 10.1016/j.csbj.2024.05.046. eCollection 2024. checklist symbol pdfWebOur recently developed SnapHiC pipeline provides the first tool to map chromatin loops from scHi-C data, but it is computationally intensive. Here we introduce SnapHiC2, which adapts a sliding window approximation when imputing missing contacts in each single cell and reduces both memory usage and computational time by 70%. flatbed stakes and bowsWeb1 Jan 2024 · SnapHiC2 uses sliding windows and reduces both computing time and memory by 70%. SnapHiC2 can identify 5 Kb resolution chromatin loops with high sensitivity and accuracy. SnapHiC2 can help to predict putative target genes of GWAS variants in a cell-type-specific manner. checklist tagalogWebSnapHiC2: A computationally efficient loop caller for single cell Hi-C data. X Li, L Lee, A Abnousi, M Yu, W Liu, L Huang, Y Li, M Hu. Computational and Structural Biotechnology Journal 20, 2778-2783, 2024. 3: 2024: SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single cell Hi-C data. flatbeds thomas the tank engineWeb1 Jul 2024 · SnapHiC2: A computationally efficient loop caller for single cell Hi-C data 2024, Computational and Structural Biotechnology Journal Show abstract Understanding the function of regulatory DNA interactions in the interpretation of non-coding GWAS variants 2024, Frontiers in Cell and Developmental Biology flatbed specialized transportationWebSnapHiC2: A computationally efficient loop caller for single cell Hi-C data Computational and Structural Biotechnology Journal 2024 Journal article DOI: 10.1016/j.csbj.2024.05.046 Contributors : Xiaoqi Li; Lindsay Lee; Armen Abnousi; Miao Yu; Weifang Liu; Le Huang; Yun Li; Ming Hu Show more detail Source : Crossref checklist table powerpoint